laboratory of computational biology

Our resources footprintDB
3d-footprint logo
TFmodeller
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blog: #!/perl/bioinfo

postal address
Laboratorio de Biología Computacional, Estación Experimental de Aula Dei / CSIC, Av. Montañana 1.005, 50059 Zaragoza (Spain)

phone (+34) 976716089

public transport logohow to get here
bicilogo rutas en bicicleta de Zaragoza al campus de Aula Dei
Research topics/objetivos del labo
footprint logo of restriction enzyme BamHI

footprint of dimeric complex 2bam_AB
(enzyme BamHI)

active transcriptional subnetworks in Escherichia coli

A few active transcriptional subnetworks in Escherichia coli (details here)

ML tree of plant-like FADS proteins

ML tree of plant-like FADS proteins (details here)

Multiple interface alignment of zinc fingers

Multiple interface alignment of zinc fingers (details here)

flowchart of DNAPROT footprint algorithm

DNAPROT algorithm (details here)

3D-fooprint of a comparative model of Escherichia coli FNR

structure-based position weight matrix for Escherichia coli FNR, modelled with TFmodeller
(read more here)

TFmodeller homology model of a protein-DNA complex

comparative model of a protein-DNA complex
(read more here)

evolutionary correlation between binding specificity and regulatory role in Bacteria

conceptual model of evolutionary role of binding specificity in bacterial regulatory networks
(read more here)

alpha parameter and codon usage table primers4clades benchmark

genomic benchmark of primers4clades
(read more here)

phylogenetic congruence heatmap

congruence of tree topologies derived from single and concatenated loci of Bradyrhizobium
(read more here)

flowchart of fragment-based homology modelling

benchmark of fragment-based comparative modelling approaches
(read more here)